Najafi, Ali and Varol, Onur (2024) "TurkishBERTweet: fast and reliable large language model for social media analysis", Expert Systems with Applications, Vol.255, No.Part C (SCI)
Seyedkazemi, Seyedpayam and Dass, Zuhal Ozbay and Ozbay, Ayse Elif Ozsoy and Bozkaya, Burçin and Balcısoy, Selim (2024) "Can financial transactions reveal the change in social fabric triggered by urban regeneration?", Cities, Vol.153 (SSCI)
Zouzou, Yasser and Varol, Onur (2024) "Unsupervised detection of coordinated fake-follower campaigns on social media", EPJ Data Science, Vol.13, No.1 (SCI, SSCI)
Seyedkazemi, Seyedpayam and Gursoy, M. Emre and Saygın, Yücel (2024) "LuxTrack: activity inference attacks via smartphone ambient light sensors and countermeasures", IEEE Internet of Things Journal, Vol.11, No.17, 28734-28751 (SCI)
Akbari, Vahid and Çatay, Bülent and Sadati, İhsan (2024) "Route optimization of battery electric vehicles using dynamic charging on electrified roads", Sustainable Cities and Society, Vol.109 (SCI)
Duman, Ece Naz and Taş Küten, Duygu and Çatay, Bülent (2024) "A bidirectional branch-and-price algorithm with pulse procedure for the electric vehicle routing problem with flexible deliveries", Transportation Research Part C: Emerging Technologies, Vol.165 (SCI)
Marlalı, Ekin and Balcısoy, Selim (2024) "Automated inpainting of Tex Willer comics: adapting manga techniques for western comic transformation", Visual Computer, Vol.40, No.7, 4585-4592 (SCI)
Dereli, Onur and Kuru, Nurdan and Akkoyun, Emrah and Bircan, Aylin and Taştan, Öznur and Adebali, Ogün (2024) "PHACTboost: a phylogeny-aware pathogenicity predictor for missense mutations via boosting", Molecular Biology and Evolution, Vol.41, No.7 (SCI)
İslim, Raci Berk and Çatay, Bülent (2024) "An effective matheuristic approach for solving the electric traveling salesperson problem with time windows and battery degradation", Engineering Applications of Artificial Intelligence, Vol.132 (SCI)
Beken Fikri, Figen and Oflazer, Kemal and Yanıkoğlu, Berrin (2024) "Abstractive summarization with deep reinforcement learning using semantic similarity rewards", Natural Language Engineering, Vol.30, No.3, 554-576 (SCI, SSCI, AHCI)
Kuru, Halil Ibrahim and Cicek, A. Ercument and Taştan, Öznur (2024) "From cell lines to cancer patients: personalized drug synergy prediction", Bioinformatics (Oxford, England), Vol.40, No.5 (SCI)
Meng, Xiangyi and Varol, Onur and Barabasi, Albert-Laszlo (2024) "Hidden citations obscure true impact in science", PNAS Nexus, Vol.3, No.5 (ESCI)
Şapcı, Ali Osman Berk and Kemik, Hasan and Yeniterzi, Reyyan and Taştan, Öznur (2024) "Focusing on potential named entities during active label acquisition", Natural Language Engineering, Vol.30, No.3, 602-624 (SCI, SSCI, AHCI)
Najafi, Ali and Muğurtay, Nihat and Zouzou, Yasser and Demirci, Ege and Demirkıran, Serhat and Karadeniz, Hüseyin Alper and Varol, Onur (2024) "First public dataset to study 2023 Turkish general election", Scientific Reports, Vol.14, No.1 (SCI)
Boz, Hasan Alp and Bahrami, Mohsen and Balcısoy, Selim and Bozkaya, Burçin and Mazar, Nina and Nichols, Aaron and Pentland, Alex (2024) "Investigating neighborhood adaptability using mobility networks: a case study of the COVID-19 pandemic", Humanities and Social Sciences Communications, Vol.11, No.1 (SSCI, AHCI)
Ahmed, Faran and Kılıç, Kemal (2024) "Does fuzzification of pairwise comparisons in analytic hierarchy process add any value?", Soft Computing, Vol.28, 4267-4284 (SCI)
Ebrahimi Araghizad, Arash and Pashmforoush, Farzad and Tehranizadeh, Faraz and Kılıç, Kemal and Budak, Erhan (2024) "Improving milling force predictions: a hybrid approach integrating physics-based simulation and machine learning for remarkable accuracy across diverse unseen materials and tool types", Journal of Manufacturing Processes, Vol.114, 92-107 (SCI)
Aksoy, Ozan and Yıldırım, Sinan (2024) "A model of dynamic flows: explaining Turkey's interprovincial migration", Sociological Methodology, Vol.54, No.1, 52-91 (SSCI)
Yıldırım, Sinan (2024) "Differentially private online Bayesian estimation with adaptive truncation", Turkish Journal of Electrical Engineering and Computer Sciences, Vol.32, No.1, 34-50 (SCI)
Göktürk, Gökhan and Kaya, Kamer (2024) "Fast and error-adaptive influence maximization based on count-distinct sketches", Information Sciences, Vol.655 (SCI)
Seçkin, Özgür Can and Atalay, Aybuke and Ötenen, Ege and Duygu, Umut and Varol, Onur (2024) "Mechanisms driving online vaccine debate during the COVID-19 pandemic", Social Media and Society, Vol.10, No.1 (SSCI)
Brei, Vinicius Andrade and Rech, Nicole and Bozkaya, Burçin and Balcısoy, Selim and Pentland, Alex Paul and Silveira Netto, Carla Freitas (2023) "Satellite imagery and machine learning for channel member selection", International Journal of Retail and Distribution Management, Vol.51, No.11, 1552-1568 (SSCI)
Ahmed, Faran and Kılıç, Kemal (2023) "A basic algorithm for generating an individualized numerical scale[Formula presented]", Expert Systems with Applications, Vol.233 (SCI)
Ebrahimi Araghizad, Arash and Tehranizadeh, Faraz and Kılıç, Kemal and Budak, Erhan (2023) "Smart tool-related faults monitoring system using process simulation-based machine learning algorithms", Journal of Machine Engineering, Vol.23, No.4, 18-32 (NA)
Çatay, Bülent and Sadati, İhsan (2023) "An improved matheuristic for solving the electric vehicle routing problem with time windows and synchronized mobile charging/battery swapping", Computers and Operations Research, Vol.159 (SCI)
Moradi, Nima and Sadati, İhsan and Çatay, Bülent (2023) "Last mile delivery routing problem using autonomous electric vehicles", Computers and Industrial Engineering, Vol.184 (SCI)
Şapcı, Ali Osman Berk and Lu, Shan and Yan, Shuchen and Ay, Ferhat and Taştan, Öznur and Keleş, Sündüz (2023) "MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing", Bioinformatics, Vol.39, No.10 (SCI)
Cagatay Karakan, M. and Ari, Atakan B. and Kelleci, Mehmet and Yanık, Cenk and Kaya, İsmet İnönü and Taştan, Öznur and Selim Hanay, M. (2023) "Vapor sensing of colorectal cancer biomarkers in isolation by bare and functionalized nanoelectromechanical sensors", IEEE Sensors Journal, Vol.23, No.18, 21113-21120 (SCI)
Varol, Onur (2023) "Should we agree to disagree about Twitter's bot problem?", Online Social Networks and Media, Vol.37-38 (NA)
Tavakol Aghaei, Vahid and Ağababaoğlu, Arda and Bawo, Biram and Naseradinmousavi, Peiman and Yıldırım, Sinan and Yeşilyurt, Serhat and Onat, Ahmet (2023) "Energy optimization of wind turbines via a neural control policy based on reinforcement learning Markov chain Monte Carlo algorithm", Applied Energy, Vol.341 (SCI)
Yıldırım, Sinan and Khalafi, Mohammad and Güzel, Tayyar and Satık, Halil and Yılmaz, Murat (2023) "Supply curves in electricity markets: a framework for dynamic modeling and Monte Carlo forecasting", IEEE Transactions on Power Systems, Vol.38, No.4, 3056-3069 (SCI)
Bahrami, Mohsen and Boz, Hasan Alp and Suhara, Yoshihiko and Balcısoy, Selim and Bozkaya, Burçin and Pentland, Alex (2023) "Predicting merchant future performance using privacy-safe network-based features", Scientific Reports, Vol.13, No.1 (SCI)
Silveira Netto, Carla Freitas and Bahrami, Mohsen and Brei, Vinicius Andrade and Bozkaya, Burçin and Balcısoy, Selim and Pentland, Alex Paul (2023) "Disaggregating sales prediction: a gravitational approach", Expert Systems with Applications, Vol.217 (SCI)
Rastani, Sina and Çatay, Bülent (2023) "A large neighborhood search-based matheuristic for the load-dependent electric vehicle routing problem with time windows", Annals of Operations Research, Vol.324, No.1-2, 761-793 (SCI)
Yılmaz, Emir Alaattin and Balcısoy, Selim and Bozkaya, Burçin (2023) "A link prediction-based recommendation system using transactional data", Scientific Reports, Vol.13, No.1 (SCI)
Ozer, Erdener and Bilecen, Ali Enver and Özer, Nur Başak and Yanıkoğlu, Berrin (2023) "Intraoperative cytological diagnosis of brain tumours: a preliminary study using a deep learning model", Cytopathology, Vol.34, No.2, 113-119 (SCI)
Rafiei Anamagh, Mirmeysam and Gokalp, Kaya and Akyıldız, Taha Atahan and Alan, Salih and Kaya, Kamer and Bediz, Bekir (2023) "A hybrid CPU–GPU solver based on three-dimensional spectral Chebyshev technique for determining the dynamic behavior of thick sandwich panels", Engineering Analysis with Boundary Elements, Vol.147, 181-194 (SCI)
Nabi, Afshan and Dilekoğlu, Berke and Adebali, Ogün and Taştan, Öznur (2023) "Discovering misannotated lncRNAs using deep learning training dynamics", Bioinformatics (Oxford, England), Vol.39, No.1 (SCI)
Uner, Onur Can and Kuru, Halil Ibrahim and Cinbis, Ramazan Gokberk and Taştan, Öznur and Cicek, Ercument (2023) "DeepSide: a deep learning approach for drug side effect prediction", IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol.20, No.1, 330-339 (SCI)
Karabulut Türkseven, Ezgi and Gholizadeh, Fatemeh and Akhavan, Raha (2022) "The value of adaptive menu sizes in peer-to-peer platforms", Transportation Research Part C: Emerging Technologies, Vol.145 (SCI)
Seçkin, Özgür Can and Varol, Onur (2022) "Academic support network reflects doctoral experience and productivity", EPJ Data Science, Vol.11, No.1 (SCI, SSCI)
Üzen, Hüseyin and Türkoğlu, Muammer and Yanıkoğlu, Berrin and Hanbay, Davut (2022) "Swin-MFINet: swin transformer based multi-feature integration network for detection of pixel-level surface defects", Expert Systems with Applications, Vol.209 (SCI)
Alabsi Aljundi, Amro and Akyıldız, Taha Atahan and Kaya, Kamer (2022) "Boosting graph embedding on a single GPU", IEEE Transactions on Parallel and Distributed Systems, Vol.33, No.11, 3092-3105 (SCI)
Seyfi, Majid and Alinaghian, Mahdi and Ghorbani, Erfan and Çatay, Bülent and Saeid Sabbagh, Mohammad (2022) "Multi-mode hybrid electric vehicle routing problem", Transportation Research Part E: Logistics and Transportation Review, Vol.166 (SCI, SSCI)
Bas, Özen and Ogan, Christine L. and Varol, Onur (2022) "The role of legacy media and social media in increasing public engagement about violence against women in Turkey", Social Media and Society, Vol.8, No.4 (SSCI)
Alparslan, Barış and Yıldırım, Sinan (2022) "Statistic selection and MCMC for differentially private Bayesian estimation", Statistics and Computing, Vol.32, No.5 (SCI)
Akcan, Aysu and Taşdemir, Esma Fatıma Bilgin and Kızılırmak, Fırat and Kuru, Mehmet and Öncel, Fatma and Yanıkoğlu, Berrin (2022) "Akis: transcription software of Ottoman-Turkish texts using deep learning", Journal of the Ottoman and Turkish Studies Association, Vol.9, No.2, 43-48 (NA)
Duman, Ece Naz and Taş, Duygu and Çatay, Bülent (2022) "Branch-and-price-and-cut methods for the electric vehicle routing problem with time windows", International Journal of Production Research, Vol.60, No.17, 5332-5353 (SCI)
Wang, Xindi and Varol, Onur and Eliassi-Rad, Tina (2022) "Information access equality on generative models of complex networks", Applied Network Science, Vol.7, No.1 (ESCI)
Eroğlu, Günet and Teber, Serap and Ertürk, Kardelen and Kırmızı, Meltem and Ekici, Barıs and Arman, Fehim and Balcısoy, Selim and Özcan, Yusuf Ziya and Çetin, Müjdat (2022) "A mobile app that uses neurofeedback and multi-sensory learning methods improves reading abilities in dyslexia: a pilot study", Applied Neuropsychology: Child, Vol.11, No.3, 518-528 (SCI)
Hesam Sadati, Mir Ehsan and Akbari, Vahid and Çatay, Bülent (2022) "Electric vehicle routing problem with flexible deliveries", International Journal of Production Research (SI), Vol.60, No.13, 4268-4294 (SCI)
Kuru, Halil İbrahim and Tepeli, Yasin İlkağan and Taştan, Öznur (2022) "GEGE: predicting gene essentiality with graph embeddings", Duzce University Journal of Science and Technology, Vol.10, No.3, 1567-1577 (NA)
Kuru, Halil Ibrahim and Taştan, Öznur and Cicek, Ercument (2022) "MatchMaker: a deep learning framework for drug synergy prediction", IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol.19, No.4, 2334-2344 (SCI)
Kuru, Nurdan and Dereli, Onur and Akkoyun, Emrah and Bircan, Aylin and Taştan, Öznur and Adebali, Ogün (2022) "PHACT: phylogeny-aware computing of tolerance for missense mutations", Molecular Biology and Evolution, Vol.39, No.6 (SCI)
Ali Ahmed, Sara Atito and Yavuz, Mehmet Can and Şen, Mehmet Umut and Gülşen, Fatih and Tutar, Onur and Korkmazer, Bora and Samancı, Cesur and Şirolu, Sabri and Hamid, Rauf and Eryürekli, Ali Ergun and Mammadov, Toghrul and Yanıkoğlu, Berrin (2022) "Comparison and ensemble of 2D and 3D approaches for COVID-19 detection in CT images", Neurocomputing, Vol.488, 457-469 (SCI)
Tavakol Aghaei, Vahid and Ağababaoğlu, Arda and Yıldırım, Sinan and Onat, Ahmet (2022) "A real-world application of Markov chain Monte Carlo method for Bayesian trajectory control of a robotic manipulator", ISA Transactions, Vol.125, 580-590 (SCI)
Olgun, Gulden and Taştan, Öznur (2022) "miRCoop: identifying cooperating miRNAs via Kernel based interaction tests", IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol.19, No.3, 1760-1771 (SCI)
Kuru, Nurdan and Birbil, Ş. İlker and Gürbüzbalaban, Mert and Yıldırım, Sinan (2022) "Differentially private accelerated optimization algorithms", SIAM Journal on Optimization, Vol.32, No.2, 795-821 (SCI)
Eroğlu, Günet and Gürkan, Mert and Teber, Serap and Ertürk, Kardelen and Kırmızı, Meltem and Ekici, Barış and Arman, Fehim and Balcısoy, Selim and Özgüz, Volkan and Çetin, Müjdat (2022) "Changes in EEG complexity with neurofeedback and multi-sensory learning in children with dyslexia: a multiscale entropy analysis", Applied Neuropsychology: Child, Vol.11, No.2, 133-144 (SCI)
Gul, Saima and Rabiger, Stefan and Saygın, Yücel (2022) "Context-based extraction of concepts from unstructured textual documents", Information Sciences, Vol.588, 248-264 (SCI)
Özçelik, Duygu and Taştan, Öznur (2022) "A weakly supervised clustering method for cancer subgroup identification", Balkan Journal of Electrical and Computer Engineering, Vol.10, No.2, 178-186 (NA)
Turkoglu, Muammer and Yanıkoğlu, Berrin and Hanbay, Davut (2022) "PlantDiseaseNet: convolutional neural network ensemble for plant disease and pest detection", Signal, Image and Video Processing, Vol.16, No.2, 301-309 (SCI)
Yıldırım, Umman Mahir and Çatay, Bülent (2022) "An enhanced network-consistent travel speed generation scheme on time-dependent shortest path and routing problems", IEEE Transactions on Intelligent Transportation Systems, Vol.23, No.2, 873-884 (SCI)
Abdennebi, Anes and Elakaş, Anıl and Taşyaran, Fatih and Öztürk, Erdinç and Kaya, Kamer and Yıldırım, Sinan (2022) "Machine learning-based load distribution and balancing in heterogeneous database management systems", Concurrency and Computation: Practice and Experience, Vol.34, No.4 (SCI)
Dufossé, Fanny and Kaya, Kamer and Panagiotas, Ioannis and Uçar, Bora (2022) "Scaling matrices and counting the perfect matchings in graphs", Discrete Applied Mathematics (SI), Vol.308, 130-146 (SCI)
Yilmaz, Serhan and Fakhouri, Mohamad and Koyuturk, Mehmet and Ercument Cicek, A. and Taştan, Öznur (2022) "Uncovering complementary sets of variants for predicting quantitative phenotypes", Bioinformatics, Vol.38, No.4, 908-917 (SCI)
Singh, Karandeep and Lima, Gabriel and Cha, Meeyoung and Cha, Chiyoung and Kulshrestha, Juhi and Ahn, Yong-Yeol and
Varol, Onur (2022)
"Misinformation, believability, and vaccine acceptance over 40 countries: takeaways from the initial phase of the COVID-19 infodemic",
PLoS One, Vol.17, No.2 (SCI)
Şen, Mehmet Umut and Perez-Rosas, Veronica and Yanıkoğlu, Berrin and Abouelenien, Mohamed and Burzo, Mihai and Mihalcea, Rada (2022) "Multimodal deception detection using real-life trial data", IEEE Transactions on Affective Computing, Vol.13, No.1, 306-319 (SCI, SSCI)
Olgun, Gulden and Nabi, Afshan and Taştan, Öznur (2021) "Correction to: NoRCE: non‑coding RNA sets cis enrichment tool (BMC Bioinformatics, (2021), 22, 1, (294), 10.1186/s12859-021-04112-9)", BMC Bioinformatics, Vol.22, No.1 (SCI)
Olgun, Gulden and Nabi, Afshan and Taştan, Öznur (2021) "NoRCE: non-coding RNA sets cis enrichment tool", BMC Bioinformatics, Vol.22, No.1 (SCI)
Karabulut Türkseven, Ezgi and Ahmed, Shabbir and Nemhauser, George (2021) "Decentralized online integer programming problems with a coupling cardinality constraint", Computers and Operations Research, Vol.135 (SCI)
Taş, Mustafa Kemal and Kaya, Kamer and Yenigün, Hüsnü (2021) "Synchronizing billion-scale automata", Information Sciences, Vol.574, 162-175 (SCI)
Hesam Sadati, Mir Ehsan and Çatay, Bülent and Aksen, Deniz (2021) "An efficient variable neighborhood search with tabu shaking for a class of multi-depot vehicle routing problems", Computers and Operations Research, Vol.133 (SCI, SSCI)
Öztürk, Ülkü and Boz, Hasan Alp and Balcısoy, Selim (2021) "Visual analytic based ship collision probability modeling for ship navigation safety", Expert Systems with Applications, Vol.175 (SCI)
Ali Ahmed, Sara Atito and Zor, Cemre and Awais, Muhammad and Yanıkoğlu, Berrin and Kittler, Josef (2021) "Deep convolutional neural network ensembles using ECOC", IEEE Access, Vol.9, 86083-86095 (SCI)
Sadatizamanabad, Mirehsan Hesam and Çatay, Bülent (2021) "A hybrid variable neighborhood search approach for the multi-depot green vehicle routing problem", Transportation Research Part E: Logistics and Transportation Review, Vol.149 (SCI, SSCI)
Göktürk, Gökhan and Kaya, Kamer (2021) "Boosting parallel influence-maximization Kernels for undirected networks with fusing and vectorization", IEEE Transactions on Parallel and Distributed Systems, Vol.32, No.5, 1001-1013 (SCI)
Kuru, Halil Ibrahim and Buyukozkan, Mustafa and Taştan, Öznur (2021) "PRER: a patient representation with pairwise relative expression of proteins on biological networks", PLoS Computational Biology, Vol.17, No.5 (SCI)
Yilmaz, Serhan and Taştan, Öznur and Cicek, A. Ercument (2021) "SPADIS: an algorithm for selecting predictive and diverse SNPs in GWAS", IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol.18, No.3, 1208-1216 (SCI)
Gysi, Deisy Morselli and Do Valle, Ítalo and Zitnik, Marinka and Ameli, Asher and Gan, Xiao and Varol, Onur and Ghiassian, Susan Dina and Patten, J. J. and Davey, Robert A. and Loscalzo, Joseph and Barabási, Albert László (2021) "Network medicine framework for identifying drug-repurposing opportunities for COVID-19", Proceedings of the National Academy of Sciences of the United States of America, Vol.118, No.19 (SCI)
Kaya, Erdem and Alpan, Eray and Balcısoy, Selim and Bozkaya, Burçin (2021) "Quantifying insurance agency channel dynamics using premium sales big data and external factors", Big Data, Vol.9, No.2, 116-131 (SCI, SSCI)
Saraç, N. Ege and Altun, Ömer Faruk and Atam, Kamil Tolga and Karahoda, Sertaç and Kaya, Kamer and Yenigün, Hüsnü (2021) "Boosting expensive synchronizing heuristics", Expert Systems with Applications, Vol.167 (SCI)
Gezici, Gizem and Lipani, Aldo and Saygın, Yücel and Yılmaz, Emine (2021) "Evaluation metrics for measuring bias in search engine results", Information Retrieval Journal, Vol.24, No.2, 85-113 (SCI, SSCI)
Caylak, Gizem and Taştan, Öznur and Cicek, A. Ercument (2021) "A tool for detecting complementary single nucleotide polymorphism pairs in genome-wide association studies for epistasis testing", Journal of Computational Biology, Vol.28, No.4, 378-380 (SCI)
Caylak, Gizem and Taştan, Öznur and Cicek, A. Ercument (2021) "Potpourri: an epistasis test prioritization algorithm via diverse SNP selection", Journal of Computational Biology, Vol.28, No.4, 365-377 (SCI)
Yıldırım, Sinan and Kurutmaz, M. Burak and Barsbey, Melih and Şimşekli, Umut and Cemgil, A. Taylan (2021) "Bayesian allocation model: marginal likelihood-based model selection for count tensors", IEEE Journal of Selected Topics in Signal Processing, Vol.15, No.3, 560-573 (SCI)
Orman, Günce Keziban and Türe, Nadir and Balcısoy, Selim and Boz, Hasan Alp (2021) "Finding proper time intervals for dynamic network extraction", Journal of Statistical Mechanics: Theory and Experiment, Vol.2021, No.3 (SCI)
Keskin Özel, Merve and Çatay, Bülent and Laporte, Gilbert (2021) "A simulation-based heuristic for the electric vehicle routing problem with time windows and stochastic waiting times at recharging stations", Computers and Operations Research, Vol.125 (SCI, SSCI)
Cha, Meeyoung and Cha, Chiyoung and Singh, Karandeep and Lima, Gabriel and Ahn, Yong Yeol and Kulshrestha, Juhi and Varol, Onur (2021) "Prevalence of misinformation and factchecks on the COVID-19 pandemic in 35 countries: observational infodemiology study", JMIR Human Factors, Vol.8, No.1 (ESCI)
Karabulut Türkseven, Ezgi and Ahmed, Shabbir and Nemhauser, George (2020) "Decentralized algorithms for distributed integer programming problems with a coupling cardinality constraint", Discrete Optimization, Vol.38 (SCI)
Tepeli, Yasin İlkağan and Ünal, Ali Burak and Akdemir, Furkan Mustafa and Taştan, Öznur (2020) "PAMOGK: a pathway graph kernel-based multiomics approach for patient clustering", Bioinformatics, Vol.36, No.21, 5237-5246 (SCI)
Köseoğlu, Baran and Kaya, Erdem and Balcısoy, Selim and Bozkaya, Burçin (2020) "ST Sequence Miner: visualization and mining of spatio-temporal event sequences", Visual Computer, Vol.36, No.10-12, 2369-2381 (SCI)
Tunca, Ceren and Şeker, Tuncay and Akçimen, Fulya and Coşkun, Cemre and Bayraktar, Elif and Palvadeau, Robin and Zor, Seyit and Koçoğlu, Cemile and Kartal, Ece and Şen, Nesli Ece and Hamzeiy, Hamid and Özoğuz Erimiş, Aslıhan and Norman, Utku and Karakahya, Oğuzhan and Olgun, Gülden and Akgün, Tahsin and Durmuş, Hacer and Şahin, Erdi and Çakar, Arman and Başar Gürsoy, Esra and Babacan Yıldız, Gülsen and İşak, Barış and Uluç, Kayıhan and Hanağası, Haşmet and Bilgiç, Başar and Turgut, Nilda and Aysal, Fikret and Ertaş, Mustafa and Boz, Cavit and Kotan, Dilcan and İdrisoğlu, Halil and Soysal, Aysun and Uzun Adatepe, Nurten and Akalın, Mehmet Ali and Koç, Filiz and Tan, Ersin and Oflazer, Piraye and Deymeer, Feza and Taştan, Öznur and Çiçek, A. Ercüment and Kavak, Erşen and Parman, Yeşim and Başak, A. Nazlı (2020) "Revisiting the complex architecture of ALS in Turkey: expanding genotypes, shared phenotypes, molecular networks, and a public variant database", Human Mutation, Vol.41, No.8, e7-e45 (SCI)
Chong, Shi Kai and Bahrami, Mohsen and Chen, Hao and Balcısoy, Selim and Bozkaya, Burçin and Pentland, Alex 'Sandy' (2020) "Economic outcomes predicted by diversity in cities", EPJ Data Science, Vol.9, No.1 (SCI, SSCI)
Deznabi, Iman and Arabaci, Busra and Koyuturk, Mehmet and Taştan, Öznur (2020) "DeepKinZero: zero-shot learning for predicting kinase-phosphosite associations involving understudied kinases", Bioinformatics, Vol.36, No.12, 3652-3661 (SCI)
Karahoda, Sertaç and Erenay, Osman Tufan and Kaya, Kamer and Türker, Uraz Cengiz and Yenigün, Hüsnü (2020) "Multicore and manycore parallelization of cheap synchronizing sequence heuristics", Journal of Parallel and Distributed Computing, Vol.140, 13-24 (SCI)
Kaplan, Emre and Gürsoy, Mehmet Emre and Nergiz, Mehmet Ercan and Saygın, Yücel (2020) "Known sample attacks on relation preserving data transformations", IEEE Transactions on Dependable and Secure Computing, Vol.17, No.2, 443-450 (SCI)
Bahrami, Mohsen and Bozkaya, Burçin and Balcısoy, Selim (2020) "Using behavioral analytics to predict customer invoice payment", Big Data, Vol.8, No.1, 25-37 (SCI)
İnan, Ali and Gürsoy, Mehmet Emre and Saygın, Yücel (2020) "Sensitivity analysis for non-interactive differential privacy: bounds and
efficient algorithms", IEEE Transactions on Dependable and Secure Computing, Vol.17, No.1, 194-207 (SCI)
Mercan, Hanefi and Yılmaz, Cemal and Kaya, Kamer (2019) "CHiP: a configurable hybrid parallel covering array constructor", IEEE Transactions on Software Engineering, Vol.45, No.12, 1270-1291 (SCI)
Kaya, Kamer (2019) "Parallel algorithms for computing sparse matrix permanents", Turkish Journal of Electrical Engineering and Computer Sciences, Vol.27, No.6, 4284-4297 (SCI)
Erdil, Ertunç and Yıldırım, Sinan and Tasdizen, Tolga and Çetin, Müjdat (2019) "Pseudo-marginal MCMC sampling for image segmentation using nonparametric shape priors", IEEE Transactions on Image Processing, Vol.28, No.11, 5702-5715 (SCI)
Yıldırım, Sinan and Ermiş, Beyza (2019) "Exact MCMC with differentially private moves: revisiting the penalty algorithm in a data privacy framework", Statistics and Computing, Vol.29, No.5, 947-963 (SCI)
Rastani, Sina and Yüksel, Tuğçe and Çatay, Bülent (2019) "Effects of ambient temperature on the route planning of electric freight vehicles", Transportation Research Part D: Transport and Environment, Vol.74, 124-141 (SCI, SSCI)
Keskin Özel, Merve and Laporte, Gilbert and Çatay, Bülent (2019) "Electric vehicle routing problem with time-dependent waiting times at recharging stations", Computers and Operations Research, Vol.107, 77-94 (SCI, SSCI)
Herrmann, Julien and Özkaya, M. Yusuf and Uçar, Bora and Kaya, Kamer and Çatalyürek, Ümit V. (2019) "Multilevel algorithms for acyclic partitioning of directed acyclic graphs", SIAM Journal on Scientific Computing, Vol.41, No.4, A2117-A2145 (SCI)
Ahmed, Faran and Kılıç, Kemal (2019) "Fuzzy analytic hierarchy process: a performance analysis of various algorithms", Fuzzy Sets and Systems, Vol.362, 110-128 (SCI, SSCI)
Kaya, Kamer and Öztoprak, Figen and Birbil, Ş. İlker and Cemgil, A. Taylan and Şimşekli, Umut and Kuru, Nurdan and Koptagel, Hazal and Öztürk, Mehmet Kaan (2019) "A framework for parallel second order incremental optimization algorithms for solving partially separable problems", Computational Optimization and Applications, Vol.72, No.3, 675-705 (SCI)
Kılıç, Kemal and Saygı, Menekşe Gizem and Sezer, Semih Onur (2019) "Exact and heuristic methods for personalized display advertising in virtual reality platforms", Journal of Industrial and Management Optimization, Vol.15, No.2, 833-854 (SCI, SSCI)
Bilgin Taşdemir, Esma Fatıma and Yanıkoğlu, Berrin (2019) "A comparative study of delayed stroke handling approaches in online handwriting", International Journal on Document Analysis and Recognition, Vol.22, No.1, 15-28 (SCI)
