Publications

Types

Dates

 to 

2019-2024

  • Article
    Boz, Hasan Alp and Bahrami, Mohsen and Balcısoy, Selim and Bozkaya, Burçin and Mazar, Nina and Nichols, Aaron and Pentland, Alex (2024) "Investigating neighborhood adaptability using mobility networks: a case study of the COVID-19 pandemic", Humanities and Social Sciences Communications, Vol.11, No.1 (SSCI, AHCI)
    Ahmed, Faran and Kılıç, Kemal (2023) "A basic algorithm for generating an individualized numerical scale[Formula presented]", Expert Systems with Applications, Vol.233 (SCI)
    Ebrahimi Araghizad, Arash and Tehranizadeh, Faraz and Kılıç, Kemal and Budak, Erhan (2023) "Smart tool-related faults monitoring system using process simulation-based machine learning algorithms", Journal of Machine Engineering, Vol.23, No.4, 18-32 (NA)
    Çatay, Bülent and Sadati, İhsan (2023) "An improved matheuristic for solving the electric vehicle routing problem with time windows and synchronized mobile charging/battery swapping", Computers and Operations Research, Vol.159 (SCI)
    Beken Fikri, Figen and Oflazer, Kemal and Yanıkoğlu, Berrin (2023) "Abstractive summarization with deep reinforcement learning using semantic similarity rewards". Published Online First https://dx.doi.org/10.1017/S1351324923000505
    Moradi, Nima and Sadati, İhsan and Çatay, Bülent (2023) "Last mile delivery routing problem using autonomous electric vehicles", Computers and Industrial Engineering, Vol.184 (SCI)
    Şapcı, Ali Osman Berk and Lu, Shan and Yan, Shuchen and Ay, Ferhat and Taştan, Öznur and Keleş, Sündüz (2023) "MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing", Bioinformatics, Vol.39, No.10 (SCI)
    Varol, Onur (2023) "Should we agree to disagree about Twitter's bot problem?", Online Social Networks and Media, Vol.37-38 (NA)
    Brei, Vinicius Andrade and Rech, Nicole and Bozkaya, Burçin and Balcısoy, Selim and Pentland, Alex Paul and Silveira Netto, Carla Freitas (2023) "Satellite imagery and machine learning for channel member selection". Published Online First https://dx.doi.org/10.1108/IJRDM-02-2023-0073
    Cagatay Karakan, M. and Ari, Atakan B. and Kelleci, Mehmet and Yanık, Cenk and Kaya, İsmet İnönü and Taştan, Öznur and Selim Hanay, M. (2023) "Vapor sensing of colorectal cancer biomarkers in isolation by bare and functionalized nanoelectromechanical sensors". Published Online First https://dx.doi.org/10.1109/JSEN.2023.3300797
    Aksoy, Ozan and Yıldırım, Sinan (2023) "A model of dynamic flows: explaining Turkey's interprovincial migration". Published Online First https://dx.doi.org/10.1177/00811750231184460
    Tavakol Aghaei, Vahid and Ağababaoğlu, Arda and Bawo, Biram and Naseradinmousavi, Peiman and Yıldırım, Sinan and Yeşilyurt, Serhat and Onat, Ahmet (2023) "Energy optimization of wind turbines via a neural control policy based on reinforcement learning Markov chain Monte Carlo algorithm", Applied Energy, Vol.341 (SCI)
    Yıldırım, Sinan and Khalafi, Mohammad and Güzel, Tayyar and Satık, Halil and Yılmaz, Murat (2023) "Supply curves in electricity markets: a framework for dynamic modeling and Monte Carlo forecasting", IEEE Transactions on Power Systems, Vol.38, No.4, 3056-3069 (SCI)
    Bahrami, Mohsen and Boz, Hasan Alp and Suhara, Yoshihiko and Balcısoy, Selim and Bozkaya, Burçin and Pentland, Alex (2023) "Predicting merchant future performance using privacy-safe network-based features", Scientific Reports, Vol.13, No.1 (SCI)
    Şapcı, Ali Osman Berk and Kemik, Hasan and Yeniterzi, Reyyan and Taştan, Öznur (2023) "Focusing on potential named entities during active label acquisition". Published Online First https://dx.doi.org/10.1017/S1351324923000165
    Silveira Netto, Carla Freitas and Bahrami, Mohsen and Brei, Vinicius Andrade and Bozkaya, Burçin and Balcısoy, Selim and Pentland, Alex Paul (2023) "Disaggregating sales prediction: a gravitational approach", Expert Systems with Applications, Vol.217 (SCI)
    Rastani, Sina and Çatay, Bülent (2023) "A large neighborhood search-based matheuristic for the load-dependent electric vehicle routing problem with time windows", Annals of Operations Research, Vol.324, No.1-2, 761-793 (SCI)
    Yılmaz, Emir Alaattin and Balcısoy, Selim and Bozkaya, Burçin (2023) "A link prediction-based recommendation system using transactional data", Scientific Reports, Vol.13, No.1 (SCI)
    Ozer, Erdener and Bilecen, Ali Enver and Özer, Nur Başak and Yanıkoğlu, Berrin (2023) "Intraoperative cytological diagnosis of brain tumours: a preliminary study using a deep learning model", Cytopathology, Vol.34, No.2, 113-119 (SCI)
    Rafiei Anamagh, Mirmeysam and Gokalp, Kaya and Akyıldız, Taha Atahan and Alan, Salih and Kaya, Kamer and Bediz, Bekir (2023) "A hybrid CPU–GPU solver based on three-dimensional spectral Chebyshev technique for determining the dynamic behavior of thick sandwich panels", Engineering Analysis with Boundary Elements, Vol.147, 181-194 (SCI)
    Özbaygın, Gizem and Karasan, Oya E. and Kara, Bahar Y. and Campbell, James F. and Ozel, Aysu (2023) "Exact solution approaches for the minimum total cost traveling salesman problem with multiple drones", Transportation Research Part B: Methodological, Vol.168, 81-123 (SCI, SSCI)
    Nabi, Afshan and Dilekoğlu, Berke and Adebali, Ogün and Taştan, Öznur (2023) "Discovering misannotated lncRNAs using deep learning training dynamics", Bioinformatics (Oxford, England), Vol.39, No.1 (SCI)
    Uner, Onur Can and Kuru, Halil Ibrahim and Cinbis, Ramazan Gokberk and Taştan, Öznur and Cicek, Ercument (2023) "DeepSide: a deep learning approach for drug side effect prediction", IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol.20, No.1, 330-339 (SCI)
    Karabulut Türkseven, Ezgi and Gholizadeh, Fatemeh and Akhavan, Raha (2022) "The value of adaptive menu sizes in peer-to-peer platforms", Transportation Research Part C: Emerging Technologies, Vol.145 (SCI)
    Seçkin, Özgür Can and Varol, Onur (2022) "Academic support network reflects doctoral experience and productivity", EPJ Data Science, Vol.11, No.1 (SCI, SSCI)
    Üzen, Hüseyin and Türkoğlu, Muammer and Yanıkoğlu, Berrin and Hanbay, Davut (2022) "Swin-MFINet: swin transformer based multi-feature integration network for detection of pixel-level surface defects", Expert Systems with Applications, Vol.209 (SCI)
    Alabsi Aljundi, Amro and Akyıldız, Taha Atahan and Kaya, Kamer (2022) "Boosting graph embedding on a single GPU", IEEE Transactions on Parallel and Distributed Systems, Vol.33, No.11, 3092-3105 (SCI)
    Seyfi, Majid and Alinaghian, Mahdi and Ghorbani, Erfan and Çatay, Bülent and Saeid Sabbagh, Mohammad (2022) "Multi-mode hybrid electric vehicle routing problem", Transportation Research Part E: Logistics and Transportation Review, Vol.166 (SCI, SSCI)
    Bas, Özen and Ogan, Christine L. and Varol, Onur (2022) "The role of legacy media and social media in increasing public engagement about violence against women in Turkey", Social Media and Society, Vol.8, No.4 (SSCI)
    Alparslan, Barış and Yıldırım, Sinan (2022) "Statistic selection and MCMC for differentially private Bayesian estimation", Statistics and Computing, Vol.32, No.5 (SCI)
    Akcan, Aysu and Taşdemir, Esma Fatıma Bilgin and Kızılırmak, Fırat and Kuru, Mehmet and Öncel, Fatma and Yanıkoğlu, Berrin (2022) "Akis: transcription software of Ottoman-Turkish texts using deep learning", Journal of the Ottoman and Turkish Studies Association, Vol.9, No.2, 43-48 (NA)
    Duman, Ece Naz and Taş, Duygu and Çatay, Bülent (2022) "Branch-and-price-and-cut methods for the electric vehicle routing problem with time windows", International Journal of Production Research, Vol.60, No.17, 5332-5353 (SCI)
    Wang, Xindi and Varol, Onur and Eliassi-Rad, Tina (2022) "Information access equality on generative models of complex networks", Applied Network Science, Vol.7, No.1 (ESCI)
    Eroğlu, Günet and Teber, Serap and Ertürk, Kardelen and Kırmızı, Meltem and Ekici, Barıs and Arman, Fehim and Balcısoy, Selim and Özcan, Yusuf Ziya and Çetin, Müjdat (2022) "A mobile app that uses neurofeedback and multi-sensory learning methods improves reading abilities in dyslexia: a pilot study", Applied Neuropsychology: Child, Vol.11, No.3, 518-528 (SCI)
    Hesam Sadati, Mir Ehsan and Akbari, Vahid and Çatay, Bülent (2022) "Electric vehicle routing problem with flexible deliveries", International Journal of Production Research (SI), Vol.60, No.13, 4268-4294 (SCI)
    Kuru, Halil İbrahim and Tepeli, Yasin İlkağan and Taştan, Öznur (2022) "GEGE: predicting gene essentiality with graph embeddings", Duzce University Journal of Science and Technology, Vol.10, No.3, 1567-1577 (NA)
    Kuru, Halil Ibrahim and Taştan, Öznur and Cicek, Ercument (2022) "MatchMaker: a deep learning framework for drug synergy prediction", IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol.19, No.4, 2334-2344 (SCI)
    Kuru, Nurdan and Dereli, Onur and Akkoyun, Emrah and Bircan, Aylin and Taştan, Öznur and Adebali, Ogün (2022) "PHACT: phylogeny-aware computing of tolerance for missense mutations", Molecular Biology and Evolution, Vol.39, No.6 (SCI)
    Ali Ahmed, Sara Atito and Yavuz, Mehmet Can and Şen, Mehmet Umut and Gülşen, Fatih and Tutar, Onur and Korkmazer, Bora and Samancı, Cesur and Şirolu, Sabri and Hamid, Rauf and Eryürekli, Ali Ergun and Mammadov, Toghrul and Yanıkoğlu, Berrin (2022) "Comparison and ensemble of 2D and 3D approaches for COVID-19 detection in CT images", Neurocomputing, Vol.488, 457-469 (SCI)
    Tavakol Aghaei, Vahid and Ağababaoğlu, Arda and Yıldırım, Sinan and Onat, Ahmet (2022) "A real-world application of Markov chain Monte Carlo method for Bayesian trajectory control of a robotic manipulator", ISA Transactions, Vol.125, 580-590 (SCI)
    Olgun, Gulden and Taştan, Öznur (2022) "miRCoop: identifying cooperating miRNAs via Kernel based interaction tests", IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol.19, No.3, 1760-1771 (SCI)
    Kuru, Nurdan and Birbil, Ş. İlker and Gürbüzbalaban, Mert and Yıldırım, Sinan (2022) "Differentially private accelerated optimization algorithms", SIAM Journal on Optimization, Vol.32, No.2, 795-821 (SCI)
    Eroğlu, Günet and Gürkan, Mert and Teber, Serap and Ertürk, Kardelen and Kırmızı, Meltem and Ekici, Barış and Arman, Fehim and Balcısoy, Selim and Özgüz, Volkan and Çetin, Müjdat (2022) "Changes in EEG complexity with neurofeedback and multi-sensory learning in children with dyslexia: a multiscale entropy analysis", Applied Neuropsychology: Child, Vol.11, No.2, 133-144 (SCI)
    Gul, Saima and Rabiger, Stefan and Saygın, Yücel (2022) "Context-based extraction of concepts from unstructured textual documents", Information Sciences, Vol.588, 248-264 (SCI)
    Özçelik, Duygu and Taştan, Öznur (2022) "A weakly supervised clustering method for cancer subgroup identification", Balkan Journal of Electrical and Computer Engineering, Vol.10, No.2, 178-186 (NA)
    Turkoglu, Muammer and Yanıkoğlu, Berrin and Hanbay, Davut (2022) "PlantDiseaseNet: convolutional neural network ensemble for plant disease and pest detection", Signal, Image and Video Processing, Vol.16, No.2, 301-309 (SCI)
    Yıldırım, Umman Mahir and Çatay, Bülent (2022) "An enhanced network-consistent travel speed generation scheme on time-dependent shortest path and routing problems", IEEE Transactions on Intelligent Transportation Systems, Vol.23, No.2, 873-884 (SCI)
    Abdennebi, Anes and Elakaş, Anıl and Taşyaran, Fatih and Öztürk, Erdinç and Kaya, Kamer and Yıldırım, Sinan (2022) "Machine learning-based load distribution and balancing in heterogeneous database management systems", Concurrency and Computation: Practice and Experience, Vol.34, No.4 (SCI)
    Dufossé, Fanny and Kaya, Kamer and Panagiotas, Ioannis and Uçar, Bora (2022) "Scaling matrices and counting the perfect matchings in graphs", Discrete Applied Mathematics (SI), Vol.308, 130-146 (SCI)
    Yilmaz, Serhan and Fakhouri, Mohamad and Koyuturk, Mehmet and Ercument Cicek, A. and Taştan, Öznur (2022) "Uncovering complementary sets of variants for predicting quantitative phenotypes", Bioinformatics, Vol.38, No.4, 908-917 (SCI)
    Singh, Karandeep and Lima, Gabriel and Cha, Meeyoung and Cha, Chiyoung and Kulshrestha, Juhi and Ahn, Yong-Yeol and Varol, Onur (2022) "Misinformation, believability, and vaccine acceptance over 40 countries: takeaways from the initial phase of the COVID-19 infodemic", PLoS One, Vol.17, No.2 (SCI)
    Şen, Mehmet Umut and Perez-Rosas, Veronica and Yanıkoğlu, Berrin and Abouelenien, Mohamed and Burzo, Mihai and Mihalcea, Rada (2022) "Multimodal deception detection using real-life trial data", IEEE Transactions on Affective Computing, Vol.13, No.1, 306-319 (SCI, SSCI)
    Olgun, Gulden and Nabi, Afshan and Taştan, Öznur (2021) "Correction to: NoRCE: non‑coding RNA sets cis enrichment tool (BMC Bioinformatics, (2021), 22, 1, (294), 10.1186/s12859-021-04112-9)", BMC Bioinformatics, Vol.22, No.1 (SCI)
    Olgun, Gulden and Nabi, Afshan and Taştan, Öznur (2021) "NoRCE: non-coding RNA sets cis enrichment tool", BMC Bioinformatics, Vol.22, No.1 (SCI)
    Karabulut Türkseven, Ezgi and Ahmed, Shabbir and Nemhauser, George (2021) "Decentralized online integer programming problems with a coupling cardinality constraint", Computers and Operations Research, Vol.135 (SCI)
    Taş, Mustafa Kemal and Kaya, Kamer and Yenigün, Hüsnü (2021) "Synchronizing billion-scale automata", Information Sciences, Vol.574, 162-175 (SCI)
    Özbaygın, Gizem and Koca, Esra and Yaman, Hande (2021) "An exact solution approach for the inventory routing problem with time windows", Computers and Operations Research, Vol.134 (SCI, SSCI)
    Hesam Sadati, Mir Ehsan and Çatay, Bülent and Aksen, Deniz (2021) "An efficient variable neighborhood search with tabu shaking for a class of multi-depot vehicle routing problems", Computers and Operations Research, Vol.133 (SCI, SSCI)
    Öztürk, Ülkü and Boz, Hasan Alp and Balcısoy, Selim (2021) "Visual analytic based ship collision probability modeling for ship navigation safety", Expert Systems with Applications, Vol.175 (SCI)
    Ali Ahmed, Sara Atito and Zor, Cemre and Awais, Muhammad and Yanıkoğlu, Berrin and Kittler, Josef (2021) "Deep convolutional neural network ensembles using ECOC", IEEE Access, Vol.9, 86083-86095 (SCI)
    Sadatizamanabad, Mirehsan Hesam and Çatay, Bülent (2021) "A hybrid variable neighborhood search approach for the multi-depot green vehicle routing problem", Transportation Research Part E: Logistics and Transportation Review, Vol.149 (SCI, SSCI)
    Göktürk, Gökhan and Kaya, Kamer (2021) "Boosting parallel influence-maximization Kernels for undirected networks with fusing and vectorization", IEEE Transactions on Parallel and Distributed Systems, Vol.32, No.5, 1001-1013 (SCI)
    Kuru, Halil Ibrahim and Buyukozkan, Mustafa and Taştan, Öznur (2021) "PRER: a patient representation with pairwise relative expression of proteins on biological networks", PLoS Computational Biology, Vol.17, No.5 (SCI)
    Yilmaz, Serhan and Taştan, Öznur and Cicek, A. Ercument (2021) "SPADIS: an algorithm for selecting predictive and diverse SNPs in GWAS", IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol.18, No.3, 1208-1216 (SCI)
    Gysi, Deisy Morselli and Do Valle, Ítalo and Zitnik, Marinka and Ameli, Asher and Gan, Xiao and Varol, Onur and Ghiassian, Susan Dina and Patten, J. J. and Davey, Robert A. and Loscalzo, Joseph and Barabási, Albert László (2021) "Network medicine framework for identifying drug-repurposing opportunities for COVID-19", Proceedings of the National Academy of Sciences of the United States of America, Vol.118, No.19 (SCI)
    Kaya, Erdem and Alpan, Eray and Balcısoy, Selim and Bozkaya, Burçin (2021) "Quantifying insurance agency channel dynamics using premium sales big data and external factors", Big Data, Vol.9, No.2, 116-131 (SCI, SSCI)
    Saraç, N. Ege and Altun, Ömer Faruk and Atam, Kamil Tolga and Karahoda, Sertaç and Kaya, Kamer and Yenigün, Hüsnü (2021) "Boosting expensive synchronizing heuristics", Expert Systems with Applications, Vol.167 (SCI)
    Gezici, Gizem and Lipani, Aldo and Saygın, Yücel and Yılmaz, Emine (2021) "Evaluation metrics for measuring bias in search engine results", Information Retrieval Journal, Vol.24, No.2, 85-113 (SCI, SSCI)
    Caylak, Gizem and Taştan, Öznur and Cicek, A. Ercument (2021) "A tool for detecting complementary single nucleotide polymorphism pairs in genome-wide association studies for epistasis testing", Journal of Computational Biology, Vol.28, No.4, 378-380 (SCI)
    Caylak, Gizem and Taştan, Öznur and Cicek, A. Ercument (2021) "Potpourri: an epistasis test prioritization algorithm via diverse SNP selection", Journal of Computational Biology, Vol.28, No.4, 365-377 (SCI)
    Yıldırım, Sinan and Kurutmaz, M. Burak and Barsbey, Melih and Şimşekli, Umut and Cemgil, A. Taylan (2021) "Bayesian allocation model: marginal likelihood-based model selection for count tensors", IEEE Journal of Selected Topics in Signal Processing, Vol.15, No.3, 560-573 (SCI)
    Orman, Günce Keziban and Türe, Nadir and Balcısoy, Selim and Boz, Hasan Alp (2021) "Finding proper time intervals for dynamic network extraction", Journal of Statistical Mechanics: Theory and Experiment, Vol.2021, No.3 (SCI)
    Keskin Özel, Merve and Çatay, Bülent and Laporte, Gilbert (2021) "A simulation-based heuristic for the electric vehicle routing problem with time windows and stochastic waiting times at recharging stations", Computers and Operations Research, Vol.125 (SCI, SSCI)
    Cha, Meeyoung and Cha, Chiyoung and Singh, Karandeep and Lima, Gabriel and Ahn, Yong Yeol and Kulshrestha, Juhi and Varol, Onur (2021) "Prevalence of misinformation and factchecks on the COVID-19 pandemic in 35 countries: observational infodemiology study", JMIR Human Factors, Vol.8, No.1 (ESCI)
    Karabulut Türkseven, Ezgi and Ahmed, Shabbir and Nemhauser, George (2020) "Decentralized algorithms for distributed integer programming problems with a coupling cardinality constraint", Discrete Optimization, Vol.38 (SCI)
    Tepeli, Yasin İlkağan and Ünal, Ali Burak and Akdemir, Furkan Mustafa and Taştan, Öznur (2020) "PAMOGK: a pathway graph kernel-based multiomics approach for patient clustering", Bioinformatics, Vol.36, No.21, 5237-5246 (SCI)
    Köseoğlu, Baran and Kaya, Erdem and Balcısoy, Selim and Bozkaya, Burçin (2020) "ST Sequence Miner: visualization and mining of spatio-temporal event sequences", Visual Computer, Vol.36, No.10-12, 2369-2381 (SCI)
    Naderi, Siamak and Kılıç, Kemal and Daşcı, Abdullah (2020) "A deterministic model for the transshipment problem of a fast fashion retailer under capacity constraints", International Journal of Production Economics, Vol.227 (SCI, SSCI)
    Tunca, Ceren and Şeker, Tuncay and Akçimen, Fulya and Coşkun, Cemre and Bayraktar, Elif and Palvadeau, Robin and Zor, Seyit and Koçoğlu, Cemile and Kartal, Ece and Şen, Nesli Ece and Hamzeiy, Hamid and Özoğuz Erimiş, Aslıhan and Norman, Utku and Karakahya, Oğuzhan and Olgun, Gülden and Akgün, Tahsin and Durmuş, Hacer and Şahin, Erdi and Çakar, Arman and Başar Gürsoy, Esra and Babacan Yıldız, Gülsen and İşak, Barış and Uluç, Kayıhan and Hanağası, Haşmet and Bilgiç, Başar and Turgut, Nilda and Aysal, Fikret and Ertaş, Mustafa and Boz, Cavit and Kotan, Dilcan and İdrisoğlu, Halil and Soysal, Aysun and Uzun Adatepe, Nurten and Akalın, Mehmet Ali and Koç, Filiz and Tan, Ersin and Oflazer, Piraye and Deymeer, Feza and Taştan, Öznur and Çiçek, A. Ercüment and Kavak, Erşen and Parman, Yeşim and Başak, A. Nazlı (2020) "Revisiting the complex architecture of ALS in Turkey: expanding genotypes, shared phenotypes, molecular networks, and a public variant database", Human Mutation, Vol.41, No.8, e7-e45 (SCI)
    Chong, Shi Kai and Bahrami, Mohsen and Chen, Hao and Balcısoy, Selim and Bozkaya, Burçin and Pentland, Alex 'Sandy' (2020) "Economic outcomes predicted by diversity in cities", EPJ Data Science, Vol.9, No.1 (SCI, SSCI)
    Deznabi, Iman and Arabaci, Busra and Koyuturk, Mehmet and Taştan, Öznur (2020) "DeepKinZero: zero-shot learning for predicting kinase-phosphosite associations involving understudied kinases", Bioinformatics, Vol.36, No.12, 3652-3661 (SCI)
    Karahoda, Sertaç and Erenay, Osman Tufan and Kaya, Kamer and Türker, Uraz Cengiz and Yenigün, Hüsnü (2020) "Multicore and manycore parallelization of cheap synchronizing sequence heuristics", Journal of Parallel and Distributed Computing, Vol.140, 13-24 (SCI)
    Kaplan, Emre and Gürsoy, Mehmet Emre and Nergiz, Mehmet Ercan and Saygın, Yücel (2020) "Known sample attacks on relation preserving data transformations", IEEE Transactions on Dependable and Secure Computing, Vol.17, No.2, 443-450 (SCI)
    Bahrami, Mohsen and Bozkaya, Burçin and Balcısoy, Selim (2020) "Using behavioral analytics to predict customer invoice payment", Big Data, Vol.8, No.1, 25-37 (SCI)
    İnan, Ali and Gürsoy, Mehmet Emre and Saygın, Yücel (2020) "Sensitivity analysis for non-interactive differential privacy: bounds and efficient algorithms", IEEE Transactions on Dependable and Secure Computing, Vol.17, No.1, 194-207 (SCI)
    Mercan, Hanefi and Yılmaz, Cemal and Kaya, Kamer (2019) "CHiP: a configurable hybrid parallel covering array constructor", IEEE Transactions on Software Engineering, Vol.45, No.12, 1270-1291 (SCI)
    Kaya, Kamer (2019) "Parallel algorithms for computing sparse matrix permanents", Turkish Journal of Electrical Engineering and Computer Sciences, Vol.27, No.6, 4284-4297 (SCI)
    Erdil, Ertunç and Yıldırım, Sinan and Tasdizen, Tolga and Çetin, Müjdat (2019) "Pseudo-marginal MCMC sampling for image segmentation using nonparametric shape priors", IEEE Transactions on Image Processing, Vol.28, No.11, 5702-5715 (SCI)
    Özbaygın, Gizem and Savelsbergh, Martin (2019) "An iterative re-optimization framework for the dynamic vehicle routing problem with roaming delivery locations", Transportation Research Part B: Methodological, Vol.128, 207-235 (SCI, SSCI)
    Yıldırım, Sinan and Ermiş, Beyza (2019) "Exact MCMC with differentially private moves: revisiting the penalty algorithm in a data privacy framework", Statistics and Computing, Vol.29, No.5, 947-963 (SCI)
    Rastani, Sina and Yüksel, Tuğçe and Çatay, Bülent (2019) "Effects of ambient temperature on the route planning of electric freight vehicles", Transportation Research Part D: Transport and Environment, Vol.74, 124-141 (SCI, SSCI)
    Keskin Özel, Merve and Laporte, Gilbert and Çatay, Bülent (2019) "Electric vehicle routing problem with time-dependent waiting times at recharging stations", Computers and Operations Research, Vol.107, 77-94 (SCI, SSCI)
    Hatipoğlu, Emre and Gökçe, Osman Zeki and Arın, İnanç and Saygın, Yücel (2019) "Automated text analysis and international relations: the introduction and application of a novel technique for Twitter", All Azimuth: A Journal of Foreign Policy and Peace, Vol.8, No.2, 183-204 (ESCI)
    Herrmann, Julien and Özkaya, M. Yusuf and Uçar, Bora and Kaya, Kamer and Çatalyürek, Ümit V. (2019) "Multilevel algorithms for acyclic partitioning of directed acyclic graphs", SIAM Journal on Scientific Computing, Vol.41, No.4, A2117-A2145 (SCI)
    Ahmed, Faran and Kılıç, Kemal (2019) "Fuzzy analytic hierarchy process: a performance analysis of various algorithms", Fuzzy Sets and Systems, Vol.362, 110-128 (SCI, SSCI)
    Göğüş, Aytaç and Saygın, Yücel (2019) "Privacy perception and information technology utilization of high school students", Heliyon, Vol.5, No.5 (SCI)
    Kaya, Kamer and Öztoprak, Figen and Birbil, Ş. İlker and Cemgil, A. Taylan and Şimşekli, Umut and Kuru, Nurdan and Koptagel, Hazal and Öztürk, Mehmet Kaan (2019) "A framework for parallel second order incremental optimization algorithms for solving partially separable problems", Computational Optimization and Applications, Vol.72, No.3, 675-705 (SCI)
    Kılıç, Kemal and Saygı, Menekşe Gizem and Sezer, Semih Onur (2019) "Exact and heuristic methods for personalized display advertising in virtual reality platforms", Journal of Industrial and Management Optimization, Vol.15, No.2, 833-854 (SCI, SSCI)
    Bilgin Taşdemir, Esma Fatıma and Yanıkoğlu, Berrin (2019) "A comparative study of delayed stroke handling approaches in online handwriting", International Journal on Document Analysis and Recognition, Vol.22, No.1, 15-28 (SCI)
    Amro, Belal Mohammed and Levi, Albert and Saygın, Yücel (2019) "Flexible fair and collusion resistant pseudonym providing system", The International Arab Journal of Information Technology, Vol.16, No.1, 80-87 (SCI)
  • Book Section / Chapter
    Gürkan, Mert and Bozkaya, Burçin and Balcısoy, Selim, "Financial datasets: leveraging transactional big data in mobility and migration studies", Data Science for Migration and Mobility, Salah, Ali Albert and Korkmaz, Emre Eren and Bircan, Tuba (eds.), Oxford: Oxford University Press, November 2022
    Fındık, Yasin and Boz, Hasan Alp and Balcısoy, Selim, "Facilitating decision-making with multimodal interfaces in collaborative analytical sessions", Intelligent Scene Modeling and Human-Computer Interaction, Thalmann, Nadia Magnenat and Zhang, Jian Jun and Ramanathan, Manoj and Thalmann, Daniel (eds.), Switzerland: Springer, June 2021, 199-220
    Rastani, Sina and Yüksel, Tuğçe and Çatay, Bülent, "Electric vehicle routing problem with time windows and cargo weight", Smart and Sustainable Supply Chain and Logistics – Trends, Challenges, Methods and Best Practices, Golinska-Dawson, Paulina and Tsai, Kune-Muh and Kosacka-Olejnik, Monika (eds.), Switzerland: Springer, Cham, December 2020, 175-190
    Salah, Albert Ali and Altuncu, Tarık M. and Balcısoy, Selim and Frydenlund, Erika and Mamei, Marco and Akyol, Mehmet Ali and Arslanlı, Kerem Yavuz and Bensason, Ivon and Boshuijzen-van Burken, Christine and Bosetti, Paolo and Boy, Jeremy and Bozcağa, Tuğba and Cilasun, Seyit Mümin and Işık, Oğuz and Kalaycıoğlu, Sibel and Kaptaner, Ayşe Seyyide and Kayı, İlker and Kılıç, Özgün Ozan and Kjamili, Berat and Küçükali, Hüseyin and Martin, Aaron and Lippi, Marco and Pancotto, Francesca and Rhoads, Daniel and Sevencan, Nur and Sezgin, Ervin and Solé-Ribalta, Albert and Sterly, Harald and Sürer, Elif and Taşkaya Temizel, Tuğba and Tümen, Semih and Ulutürk, İsmail, "Policy implications of the D4R challenge", Guide to Mobile Data Analytics in Refugee Scenarios: The 'Data for Refugees Challenge' Study, Salah, Albert Ali and Pentland, Alex and Lepri, Bruno and Letouze, Emmanuel (eds.), Cham: Springer International Publishing, August 2019, 477-495
  • Papers in Conference Proceedings
    Boz, Hasan Alp and Bahrami, Mohsen and Balcısoy, Selim and Pentland, Alex, "Footfall prediction using graph neural networks [Çizge sinir ağları ile yaya trafiği tahmini]", 31st Signal Processing and Communications Applications Conference (SIU), IEEE (Institute of Electrical and Electronics Engineers), July 2023
    Ergül, Halil İbrahim and Terzioğlu, Ayşecan and Tercan, Murat and Yanıkoğlu, Berrin and Arın, İnanç, "LDA topic modeling on twitter data concerning immigrants and refugees", 31st Signal Processing and Communications Applications Conference (SIU), IEEE (Institute of Electrical and Electronics Engineers), July 2023
    Varol, Onur, "Who follows Turkish Presidential candidates in 2023 elections? [Türkiye 2023 Cumhurbaşkanlığı seçimlerinde adayları kim takip ediyor?]", 31st Signal Processing and Communications Applications Conference (SIU), IEEE (Institute of Electrical and Electronics Engineers), July 2023
    Arın, İnanç and Işık, Zeynep and Kutal, Seçilay and Dehghan, Somaiyeh and Özgür, Arzucan and Yanıkoğlu, Berrin, "SIU2023-NST - Hate speech detection contest", 31st Signal Processing and Communications Applications Conference (SIU), IEEE (Institute of Electrical and Electronics Engineers), July 2023
    Akpinar, Sila and Vardar, Emre and Yeşilyurt, Serhat and Kaya, Kamer, "Solving Navier-Stokes equations with mixed equation physics informed neural networks [Navier-Stokes denklemlerinin karma denklemli fizik bilgili nöral ağlarla çözümü]", 31st Signal Processing and Communications Applications Conference (SIU), IEEE (Institute of Electrical and Electronics Engineers), July 2023
    Alparslan, Barış and Yıldırım, Sinan and Birbil, Ş. İlker, "Differentially private distributed Bayesian linear regression with MCMC", 40th International Conference on Machine Learning, PMLR, July 2023, 637-641
    Ebrahimi Araghizad, Arash and Tehranizadeh, Faraz and Kılıç, Kemal and Budak, Erhan, "Smart tool-related faults monitoring system using process simulation-based machine learning algorithms", Jedrzejewski, Jerzy (ed.), XXXIV CIRP Sponsored Conference, Poland: Wroclaw University of Science and Technology, June 2023
    Pfeffer, Juergen and Matter, Daniel and Jaidka, Kokil and Varol, Onur and Mashhadi, Afra and Lasser, Jana and Assenmacher, Dennis and Wu, Siqi and Yang, Diyi and Brantner, Cornelia and Romero, Daniel M. and Otterbacher, Jahna and Schwemmer, Carsten and Joseph, Kenneth and Garcia, David and Morstatter, Fred, "Just another day on Twitter: a complete 24 hours of Twitter data", Lin, Yu-Ru and Cha, Meeyoung and Quercia, Daniele (eds.), Seventeenth International AAAI Conference on Web and Social Media (ICWSM 2023), AAAI (Association for the Advancement of Artificial Intelligence), June 2023, 1073-1081
    Zeyneloğlu, Mehmet Arın and Ahmed, Sara Atito Ali and Yanıkoğlu, Berrin, "Face attribute classification with evidential deep learning", Osten, W. and Nikolaev, D. and Zhou, J. (eds.), 15th International Conference on Machine Vision (ICMV 2022), Rome, Italy: SPIE (Society of Photo-Optical Instrumentation Engineers), June 2023
    Ahmed, Sara Atito Ali and Yanıkoğlu, Berrin, "Relative attributes classification via transformers and rank SVM loss", Osten, W. and Nikolaev, D. and Zhou, J. (eds.), 15th International Conference on Machine Vision (ICMV 2022), Rome, Italy: SPIE (Society of Photo-Optical Instrumentation Engineers), June 2023
    Alserr, Nour Almadhoun and Kale, Gulce and Mutlu, Onur and Taştan, Öznur and Ayday, Erman, "Tuning privacy-utility tradeoff in genomic studies using selective SNP hiding", 21st Asia Pacific Bioinformatics Conference (APBC 2023), Central South University, April 2023
    Ozturkcan, Selcen and Kasap, Nihat and Arın, İnanç and Saygın, Yücel, "Reflections of social support on Twitter: the case of the Soma mine disaster in Turkey", Alareeni, Bahaaeddin and Hamdan, Allam and Khamis, Reem and El Khoury, Rim (eds.), International Conference on Business and Technology, ICBT 2022, Springer Cham, March 2023, 79-88
    Tezcan, Erhan and Torun, Tugba and Kosar, Fahrican and Kaya, Kamer and Unat, Didem, "Mixed and multi-precision SpMV for GPUs with row-wise precision selection", IEEE 34th International Symposium on Computer Architecture and High Performance Computing (SBAC-PAD), IEEE Computer Society, November 2022, 31-40
    İslim, Raci Berk and Çatay, Bülent, "The effect of battery degradation on the route optimization of electric vehicles", Cruz-Cunha, Maria Manuela and Mateus-Coelho, Nuno (eds.), International Conference on Industry Sciences and Computer Science Innovation, Elsevier, September 2022, 1-8
    Yavuz, Mehmet Can and Yanıkoğlu, Berrin, "VCL-PL: semi-supervised learning from noisy web data with variational contrastive learning", 26th International Conference on Pattern Recognition (ICPR), Institute of Electrical and Electronics Engineers, August 2022, 740-747
    Beyhan, Fatih and Çarık, Buse and Arın, İnanç and Terzioğlu, Ayşecan and Yanıkoğlu, Berrin and Yeniterzi, Reyyan, "A Turkish hate speech dataset and detection system", Calzolari, N. and Bechet, F. and Blache, P. and Choukri, K. and Cieri, C. and Declerck, T. and Goggi, S. and Isahara, H. and Maegaard, B. and Mazo, H. and Odijk, H. and Piperidis, S. (eds.), 13th Conference on Language Resources and Evaluation (LREC 2022), European Language Resources Association (ELRA), June 2022, 4177-4185
    Öztürkcan, Selcen and Arın, İnanç and Kasap, Nihat and Saygın, Yücel, "Twitter reflections on Syrian conflict from Turkey", Alareeni, Bahaaeddin and Hamdan, Allam (eds.), International Conference on Business and Technology, ICBT 2021, Springer Cham, June 2022, 833-857
    Alabsi Aljundi, Amro and Akyıldız, Taha Atahan and Kaya, Kamer, "Degree-aware Kernels for computing Jaccard weights on GPUs", IEEE International Parallel and Distributed Processing Symposium (IPDPS), Institute of Electrical and Electronics Engineers, May 2022, 897-907
    Göktürk, Gökhan and Kaya, Kamer, "Fast and high-quality influence maximization on multiple GPUs", IEEE International Parallel and Distributed Processing Symposium (IPDPS), Institute of Electrical and Electronics Engineers, May 2022, 908-918
    Min, Koo Sie and Zulkifley, Mohd Asyraf and Yanıkoğlu, Berrin and Kamari, Nor Azwan Mohamed, "Apex frame spotting using convolutional neural networks with continuous labeling", Mahyuddin, Nor Muzlifah and Noor, Nor Rizuan Mat and Sakim, Harsa Amylia Mat (eds.), 11th International Conference on Robotics, Vision, Signal Processing and Power Applications, RoViSP 2021, Springer Singapore, February 2022, 834-839
    Beken Fikri, Figen and Oflazer, Kemal and Yanıkoğlu, Berrin, "Semantic similarity based evaluation for abstractive news summarization", Bosselut, A. and Durmus, E. and Gangal, V. P. and Gehrmann, S. and Jernite, Y. and Perez-Beltrachini, L. and Shaikh, S. and Xu, W. (eds.), 1st Workshop on Natural Language Generation, Evaluation, and Metrics, GEM 2021, Association for Computational Linguistics (ACL), August 2021, 24-33
    Beken Fikri, Figen and Oflazer, Kemal and Yanıkoğlu, Berrin, "Turkish dataset for semantic textual similarity [Anlamsal metin benzerliği için Türkçe veri kümesi]", 29th Signal Processing and Communications Applications Conference (SIU), IEEE (Institute of Electrical and Electronics Engineers), July 2021
    Yavuz, Mehmet Can and Ali Ahmed, Sara Atito and Kısaağa, Mehmet Efe and Ocak, Hasan and Yanıkoğlu, Berrin, "YFCC-CelebA face attributes datasets [YFCC-CelebA yüz özellikleri veri setleri]", 29th Signal Processing and Communications Applications Conference (SIU), Institute of Electrical and Electronics Engineers, June 2021
    Ali Ahmed, Sara Atito and Yanıkoğlu, Berrin, "Relative attribute classification with deep-ranksvm", Del Bimbo, Alberto and Cucchiara, Rita and Sclaroff, Stan and Farinella, Giovanni Maria and Mei, Tao and Bertini, Marco and Escalante, Hugo Jair and Vezzani, Roberto (eds.), 25th International Conference on Pattern Recognition Workshops, ICPR 2020, Springer Cham, February 2021, 659-671
    Ali Ahmed, Sara Atito and Yanıkoğlu, Berrin and Zor, Cemre and Awais, Muhammad and Kittler, Josef, "Skin lesion diagnosis with imbalanced ECOC ensembles", Nicosia, Giuseppe and Ojha, Varun and La Malfa, Emanuele and Jansen, Giorgio and Sciacca, Vincenzo and Pardalos, Panos and Giuffrida, Giovanni and Umeton, Renato (eds.), 6th International Conference on Machine Learning, Optimization, and Data Science, LOD 2020, Springer Cham, January 2021, 292-303
    Akyıldız, Taha Atahan and Alabsi Aljundi, Amro and Kaya, Kamer, "Understanding coarsening for embedding large-scale graphs", IEEE International Conference on Big Data (Big Data), Institute of Electrical and Electronics Engineers, December 2020, 2937-2946
    Yıldırım, Sinan and Kaya, Kamer and Aydın, Soner and Erentuğ, Hakan Buğra, "Differentially private frequency sketches for intermittent queries on large data streams", IEEE International Conference on Big Data (Big Data), Institute of Electrical and Electronics Engineers, December 2020, 4083-4092
    Kaya, Kamer and Demirel, Berker and Topal, Barış Batuhan and Aşık, Arda and Demir, İbrahim Buğra, "Vertex ordering algorithms for graph coloring problem [Çizge renklendirme problemi için nokta sıralama algoritmaları]", 28th Signal Processing and Communications Applications Conference (SIU), Institute of Electrical and Electronics Engineers, October 2020
    Şapcı, Ali Osman Berk and Taştan, Öznur and Yeniterzi, Reyyan, "Active learning for Turkish text classification [Türkçe metin sınıflandırması için aktif öğrenme]", 28th Signal Processing and Communications Applications Conference (SIU), Institute of Electrical and Electronics Engineers, October 2020
    Sayyadiharikandeh, Mohsen and Varol, Onur and Yang, Kai-Cheng and Flammini, Alessandro and Menczer, Filippo, "Detection of novel social bots by ensembles of specialized classifiers", CIKM '20: Proceedings of the 29th ACM International Conference on Information & Knowledge Management, ACM, October 2020, 2725-2732
    Boz, Hasan Alp and Gürkan, Mert and Yanıkoğlu, Berrin, "Keystroke dynamics based biometric identification [Tuş vuruşa dayalı biyometrik tanıma]", 28th Signal Processing and Communications Applications Conference (SIU), Institute of Electrical and Electronics Engineers, October 2020
    Ali Ahmed, Sara Atito and Yanıkoğlu, Berrin and Goksu, Ozgu and Aptoula, Erchan, "Skin lesion classification with deep CNN ensembles", 28th Signal Processing and Communications Applications Conference (SIU), Institute of Electrical and Electronics Engineers, October 2020
    Olgun, Gulden and Taştan, Öznur, "Functional enrichment analysis of deregulated long non-coding RNAs in cancer based on their genomic neighbors", 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2020, Association for Computing Machinery, September 2020
    Akyıldız, Taha Atahan and Alabsi Aljundi, Amro and Kaya, Kamer, "GOSH: embedding big graphs on small hardware", 49th International Conference on Parallel Processing (ICPP 2020), ACM (Association for Computing Machinery), August 2020
    Aytekin, Mehmet Cem and Rabiger, Stefan and Saygın, Yücel, "Discovering the prerequisite relationships among instructional videos from subtitles", 13th International Conference on Educational Data Mining, EDM 2020, International Educational Data Mining Society, July 2020, 569-573
    Tepeli, Yasin İlkağan and Ünal, Ali Burak and Akdemir, Mustafa Furkan and Taştan, Öznur, "PAMOGK: A pathway graph kernel based multi-omics clustering approach for discovering cancer patient subgroups", Satellite Workshop on Computational Cancer Biology (RECOMB-CCB) - Jointly with RECOMB 2020, biorxiv.org, June 2020
    Kuru, Halil İbrahim and Büyüközkan, Mustafa and Taştan, Öznur, "PRER: A patient representation with pairwise relative expression of proteins on biological networks", Satellite Workshop on Computational Cancer Biology (RECOMB-CCB) - Jointly with RECOMB 2020, biorxiv.org, June 2020
    Boz, Hasan Alp and Bahrami, Mohsen and Suhara, Yoshihiko and Bozkaya, Burçin and Balcısoy, Selim, "An exploratory visual analytics tool for multivariate dynamic networks", Vrotsou, Katerina and Turkay, Çağatay (eds.), 11th International EuroVis Workshop on Visual Analytics (EuroVA), Eurographics Association, May 2020, 19-23
    Rabiger, Stefan and Dalkılıç, Tuğberk and Doğan, Alperen and Karakaş, Buket and Türetken, Berk and Saygın, Yücel, "Exploration of video e-learning content with smartphones", Sánchez, Inmaculada Arnedillo and Isaías, Pedro and Bontchev, Boyan (eds.), 16th International Conference Mobile Learning 2020 (ML 2020), IADIS, April 2020, 71-77
    Shokirov, Nozir and Çatay, Bülent and Ünlüyurt, Tonguç, "Crew constrained home health care routing problem with time windows and synchronized visits", Çalışır, Fethi and Korhan, Orhan (eds.), Global Joint Conference on Industrial Engineering and Its Application Areas (GJCIE 2019), Springer, March 2020, 87-96
    Kaya, Kamer and Langguth, Johannes and Panagiotas, Ioannis and Uçar, Bora, "Karp-Sipser based kernels for bipartite graph matching", Algorithm Engineering and Experiments (ALENEX 2020), SIAM, January 2020, 134-145
    Keskin, Merve and Akhavan Tabatabaei, Raha and Çatay, Bülent, "Electric vehicle routing problem with time windows and stochastic waiting times at recharging stations", 2019 Winter Simulation Conference (WSC), IEEE (Institute of Electrical and Electronics Engineers), December 2019, 1649-1659
    Hammoud, Khodor and Benbernou, Salima and Ouziri, Mourad and Saygın, Yücel and Haque, Rafiqul and Taher, Yehia, "Personal information privacy: what's next?", Hojeij, Marie-Rita and Taher, Yehia and Zeitouni, Karine and Finance, Béatrice and Haque, Rafiqul and Dbouk, Mohammed (eds.), 2nd International Conference on Big Data and Cyber-Security Intelligence, CEUR Workshop Proceedings, December 2019, 30-37
    Dufossé, Fanny and Kaya, Kamer and Panagiotas, Ioannis and Uçar, Bora, "Effective heuristics for matchings in hypergraphs", Kotsireas, Ilias and Pardalos, Panos and Parsopoulos, Konstantinos E. and Souravlias, Dimitris and Tsokas, Arsenis (eds.), Special Event on Analysis of Experimental Algorithms, SEA² 2019, Springer Cham, November 2019, 248-264
    Ali Ahmed, Sara Atito and Yanıkoğlu, Berrin, "Within-network ensemble for face attributes classification", Ricci, Elisa and Bulò, Samuel Rota and Snoek, Cees and Lanz, Oswald and Messelodi, Stefano and Sebe, Nicu (eds.), 20th International Conference on Image Analysis and Processing, ICIAP 2019, Springer Cham, September 2019, 466-476
    Taşyaran, Fatih and Yıldırır, Kerem and Taş, Mustafa Kemal and Kaya, Kamer, "One table to count them all: parallel frequency estimation on single-board computers", Yahyapour, Ramin (ed.), 25th International European Conference on Parallel and Distributed Computing, Euro-Par 2019, Springer Cham, August 2019, 405-418
    Nalçacı, Ayşegül and Girgin, Dilara and Balkı, Semih and Talay, Fatih and Boz, Hasan Alp and Balcısoy, Selim, "Detection of confirmation and distinction biases in visual analytics systems", Fellner, D. (ed.), 1st EuroVis Workshop on Trustworthy Visualization, TrustVis 2019, The Eurographics Association, June 2019, 13-17
    Tavakol Aghaei, Vahid and Ağababaoğlu, Arda and Onat, Ahmet and Yıldırım, Sinan, "Bayesian learning for policy search in trajectory control of a planar manipulator", Chakrabarti, S. and Saha, H. N. (eds.), IEEE 9th Annual Computing and Communication Workshop and Conference (CCWC), Institute of Electrical and Electronics Engineers, March 2019, 240-246
    Çirişci, Berk and Emek, M. Yuşa and Sorguç, Ege and Kaya, Kamer and Yenigün, Hüsnü, "Using synchronizing heuristics to construct homing sequences", Hammoudi, S. and Selic, B. and Pires, L. F. (eds.), 7th International Conference on Model-Driven Engineering and Software Development (MODELSWARD 2019), SciTePress, February 2019, 364-371
    Çirişci, Berk and Sevilmiş, Barış and Sivri, Emre Yasin and Karaçam, Poyraz Kıvanç and Kaya, Kamer and Yenigün, Hüsnü, "Synchronizing heuristics for weakly connected automata with various topologies", Pires, L. F. and Selic, B. and Hammoudi, S. (eds.), 6th International Conference on Model-Driven Engineering and Software Development (MODELSWARD 2018), Springer, February 2019, 475-493